HL_7OHU_023

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

7OHU|1|1|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHU_023 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.4979

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OHU|1|1|G|1148
7OHU|1|1|G|1149
7OHU|1|1|A|1150
7OHU|1|1|U|1151
7OHU|1|1|G|1152
7OHU|1|1|A|1153
7OHU|1|1|A|1154
7OHU|1|1|C|1155

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L33-A