HL_7OHW_012

3D structure

PDB id

7OHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHW_012 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2554

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7OHW|1|1|C|463
7OHW|1|1|U|464
7OHW|1|1|U|465
7OHW|1|1|G|466

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 3

Protein MAK16

Chain 4

Ribosomal RNA-processing protein 1

Chain C

60S ribosomal protein L4-A