HL_7OHX_025
3D structure
- PDB id
- 7OHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 7OHX|1|1|G|1349, 7OHX|1|1|A|1352, 7OHX|1|1|U|1353, 7OHX|1|1|G|1354, 7OHX|1|1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OHX_025 not in the Motif Atlas
- Homologous match to HL_8C3A_029
- Geometric discrepancy: 0.4665
- The information below is about HL_8C3A_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13577.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7OHX|1|1|U|1347
7OHX|1|1|U|1348
7OHX|1|1|G|1349
7OHX|1|1|A|1350
7OHX|1|1|U|1351
7OHX|1|1|A|1352
7OHX|1|1|U|1353
7OHX|1|1|G|1354
7OHX|1|1|A|1355
7OHX|1|1|U|1356
7OHX|1|1|G|1357
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- Protein MAK16
- Chain 4
- Ribosomal RNA-processing protein 1
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain F
- 60S ribosomal protein L7-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain e
- 60S ribosomal protein L32
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