HL_7OHX_034

3D structure

PDB id

7OHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

7OHX|1|1|A|3243, 7OHX|1|1|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHX_034 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.2224

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7OHX|1|1|C|3240
7OHX|1|1|G|3241
7OHX|1|1|G|3242
7OHX|1|1|A|3243
7OHX|1|1|A|3244
7OHX|1|1|A|3245
7OHX|1|1|G|3246
7OHX|1|1|G|3247

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A