HL_7OHY_023

3D structure

PDB id

7OHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHY_023 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.3935

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7OHY|1|1|G|1126
7OHY|1|1|G|1127
7OHY|1|1|U|1128
7OHY|1|1|A|1129
7OHY|1|1|A|1130
7OHY|1|1|G|1131
7OHY|1|1|C|1132

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1