HL_7OHY_030

3D structure

PDB id

7OHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGACGGGC

Length

9 nucleotides

Bulged bases

7OHY|1|1|G|2371, 7OHY|1|1|A|2372

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHY_030 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1303

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7OHY|1|1|G|2369
7OHY|1|1|G|2370
7OHY|1|1|G|2371
7OHY|1|1|A|2372
7OHY|1|1|C|2374
7OHY|1|1|G|2375
7OHY|1|1|G|2376
7OHY|1|1|G|2377
7OHY|1|1|C|2378

Current chains

Chain 1

25S rRNA

Nearby chains

Chain O

60S ribosomal protein L16-A