HL_7OI6_001

3D structure

PDB id

7OI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AAACCAUU

Length

8 nucleotides

Bulged bases

7OI6|1|A|A|54

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OI6_001 not in the Motif Atlas

Geometric match to HL_5TBW_001

Geometric discrepancy: 0.392

The information below is about HL_5TBW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7OI6|1|A|A|52
7OI6|1|A|A|53
7OI6|1|A|A|54
7OI6|1|A|C|55
7OI6|1|A|C|56
7OI6|1|A|A|57
7OI6|1|A|U|58
7OI6|1|A|U|59

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

39S ribosomal protein L9, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial