HL_7OI6_034

3D structure

PDB id

7OI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

ACUUACACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OI6_034 not in the Motif Atlas

Geometric match to HL_3WFS_002

Geometric discrepancy: 0.266

The information below is about HL_3WFS_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

7OI6|1|B|A|1630
7OI6|1|B|C|1631
7OI6|1|B|U|1632
7OI6|1|B|U|1633
7OI6|1|B|A|1634
7OI6|1|B|C|1635
7OI6|1|B|A|1636
7OI6|1|B|C|1637
7OI6|1|B|U|1638

Current chains

Chain B

mitochondrial Val tRNA

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial

Chain P

39S ribosomal protein L18, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial