HL_7OIB_033

3D structure

PDB id

7OIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAAAGCAG

Length

10 nucleotides

Bulged bases

7OIB|1|A|A|511

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIB_033 not in the Motif Atlas

Geometric match to HL_5VPO_138

Geometric discrepancy: 0.3911

The information below is about HL_5VPO_138

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

7OIB|1|A|C|506
7OIB|1|A|U|507
7OIB|1|A|A|508
7OIB|1|A|A|509
7OIB|1|A|A|510
7OIB|1|A|A|511
7OIB|1|A|G|512
7OIB|1|A|C|513
7OIB|1|A|A|514
7OIB|1|A|G|515

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial