HL_7OIC_009

3D structure

PDB id

7OIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

7OIC|1|A|A|321, 7OIC|1|A|A|324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIC_009 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2559

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OIC|1|A|G|318
7OIC|1|A|C|319
7OIC|1|A|G|320
7OIC|1|A|A|321
7OIC|1|A|C|322
7OIC|1|A|A|323
7OIC|1|A|A|324
7OIC|1|A|A|325
7OIC|1|A|C|326

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial