HL_7OIC_040
3D structure
- PDB id
- 7OIC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCCUAAAAGCAGCC
- Length
- 15 nucleotides
- Bulged bases
- 7OIC|1|A|A|511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OIC_040 not in the Motif Atlas
- Geometric match to HL_5TBW_226
- Geometric discrepancy: 0.3782
- The information below is about HL_5TBW_226
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59342.2
- Basepair signature
- cWW-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7OIC|1|A|G|503
7OIC|1|A|G|504
7OIC|1|A|C|505
7OIC|1|A|C|506
7OIC|1|A|U|507
7OIC|1|A|A|508
7OIC|1|A|A|509
7OIC|1|A|A|510
7OIC|1|A|A|511
7OIC|1|A|G|512
7OIC|1|A|C|513
7OIC|1|A|A|514
7OIC|1|A|G|515
7OIC|1|A|C|516
7OIC|1|A|C|517
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- 39S ribosomal protein L11, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain l
- 39S ribosomal protein L54, mitochondrial
Coloring options: