HL_7OJ0_046

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

7OJ0|1|a|G|386, 7OJ0|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_046 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1452

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7OJ0|1|a|A|382
7OJ0|1|a|C|383
7OJ0|1|a|A|384
7OJ0|1|a|C|385
7OJ0|1|a|G|386
7OJ0|1|a|U|387
7OJ0|1|a|G|388
7OJ0|1|a|G|389
7OJ0|1|a|U|390
7OJ0|1|a|A|391
7OJ0|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28