HL_7OLC_025

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAACUG

Length

8 nucleotides

Bulged bases

7OLC|1|1|C|1064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_025 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.2226

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7OLC|1|1|C|1059
7OLC|1|1|U|1060
7OLC|1|1|U|1061
7OLC|1|1|A|1062
7OLC|1|1|A|1063
7OLC|1|1|C|1064
7OLC|1|1|U|1065
7OLC|1|1|G|1066

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LD

60S ribosomal protein l5-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain Lb

60S ribosomal protein L29