HL_7OLC_042

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

7OLC|1|1|C|1826, 7OLC|1|1|G|1828, 7OLC|1|1|A|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_042 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.113

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7OLC|1|1|C|1824
7OLC|1|1|G|1825
7OLC|1|1|C|1826
7OLC|1|1|A|1827
7OLC|1|1|G|1828
7OLC|1|1|C|1829
7OLC|1|1|A|1830
7OLC|1|1|G|1831

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LP

60S ribosomal protein l17-like protein

Chain Lj

Ribosomal protein L37

Chain Ll

eL39