HL_7OLC_077

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGAUUC

Length

8 nucleotides

Bulged bases

7OLC|1|2|U|246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_077 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1955

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7OLC|1|2|G|240
7OLC|1|2|G|241
7OLC|1|2|U|242
7OLC|1|2|G|243
7OLC|1|2|A|244
7OLC|1|2|U|245
7OLC|1|2|U|246
7OLC|1|2|C|247

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SL

40S ribosomal protein S11-like protein