HL_7OLC_089

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_089 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2102

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7OLC|1|2|A|827
7OLC|1|2|U|828
7OLC|1|2|U|829
7OLC|1|2|U|830
7OLC|1|2|U|831
7OLC|1|2|G|832
7OLC|1|2|U|833
7OLC|1|2|U|834
7OLC|1|2|G|835
7OLC|1|2|G|836
7OLC|1|2|U|837
7OLC|1|2|U|838
7OLC|1|2|U|839
7OLC|1|2|C|840
7OLC|1|2|U|841

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11-like protein