HL_7OLC_099

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

7OLC|1|2|U|1311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_099 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1331

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7OLC|1|2|C|1306
7OLC|1|2|U|1307
7OLC|1|2|U|1308
7OLC|1|2|A|1309
7OLC|1|2|A|1310
7OLC|1|2|U|1311
7OLC|1|2|U|1312
7OLC|1|2|G|1313

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17-like protein

Chain Sa

40S ribosomal protein S26