HL_7OLD_071

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

7OLD|1|1|U|3292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_071 not in the Motif Atlas

Geometric match to HL_5F9R_002

Geometric discrepancy: 0.1361

The information below is about HL_5F9R_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7OLD|1|1|C|3291
7OLD|1|1|U|3292
7OLD|1|1|U|3293
7OLD|1|1|G|3294

Current chains

Chain 1

26S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8