HL_7OLD_089

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

7OLD|1|2|U|831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_089 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2335

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7OLD|1|2|A|827
7OLD|1|2|U|828
7OLD|1|2|U|829
7OLD|1|2|U|830
7OLD|1|2|U|831
7OLD|1|2|G|832
7OLD|1|2|U|833
7OLD|1|2|U|834
7OLD|1|2|G|835
7OLD|1|2|G|836
7OLD|1|2|U|837
7OLD|1|2|U|838
7OLD|1|2|U|839
7OLD|1|2|C|840
7OLD|1|2|U|841

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11-like protein