HL_7OLD_097

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

7OLD|1|2|G|1240, 7OLD|1|2|G|1242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_097 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2277

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7OLD|1|2|A|1235
7OLD|1|2|U|1236
7OLD|1|2|U|1237
7OLD|1|2|G|1238
7OLD|1|2|A|1239
7OLD|1|2|G|1240
7OLD|1|2|A|1241
7OLD|1|2|G|1242
7OLD|1|2|C|1243
7OLD|1|2|U|1244

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein s15-like protein

Chain Sd

Ribosomal protein uS14

Chain Sf

40S ribosomal protein S27a-like protein