HL_7OLD_109
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGCGAUAA
- Length
- 8 nucleotides
- Bulged bases
- 7OLD|1|4|U|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OLD_109 not in the Motif Atlas
- Geometric match to HL_4P5J_004
- Geometric discrepancy: 0.2744
- The information below is about HL_4P5J_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08550.2
- Basepair signature
- cWW-F-F-F-cSH
- Number of instances in this motif group
- 3
Unit IDs
7OLD|1|4|U|55
7OLD|1|4|G|56
7OLD|1|4|C|57
7OLD|1|4|G|58
7OLD|1|4|A|59
7OLD|1|4|U|60
7OLD|1|4|A|61
7OLD|1|4|A|62
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lh
- Dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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