HL_7OOD_001

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUUAACCUG

Length

10 nucleotides

Bulged bases

7OOD|1|3|U|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_001 not in the Motif Atlas

Geometric match to HL_6JXM_002

Geometric discrepancy: 0.2988

The information below is about HL_6JXM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OOD|1|3|U|61
7OOD|1|3|G|62
7OOD|1|3|U|63
7OOD|1|3|U|64
7OOD|1|3|A|65
7OOD|1|3|A|66
7OOD|1|3|C|67
7OOD|1|3|C|68
7OOD|1|3|U|69
7OOD|1|3|G|70

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23

Chain w

50S ribosomal protein L29