HL_7OOD_011

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAUAGCC

Length

9 nucleotides

Bulged bases

7OOD|1|3|G|363, 7OOD|1|3|A|364, 7OOD|1|3|U|365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_011 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1544

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7OOD|1|3|G|361
7OOD|1|3|U|362
7OOD|1|3|G|363
7OOD|1|3|A|364
7OOD|1|3|U|365
7OOD|1|3|A|366
7OOD|1|3|G|367
7OOD|1|3|C|368
7OOD|1|3|C|369

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain t

50S ribosomal protein L24