HL_7OOD_013

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGACCAUU

Length

8 nucleotides

Bulged bases

7OOD|1|3|G|447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_013 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.1296

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7OOD|1|3|A|446
7OOD|1|3|G|447
7OOD|1|3|A|448
7OOD|1|3|C|449
7OOD|1|3|C|450
7OOD|1|3|A|451
7OOD|1|3|U|452
7OOD|1|3|U|453

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15