HL_7OOD_017
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUUGAAGUA
- Length
- 10 nucleotides
- Bulged bases
- 7OOD|1|3|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OOD_017 not in the Motif Atlas
- Geometric match to HL_4WF9_018
- Geometric discrepancy: 0.1371
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
7OOD|1|3|U|599
7OOD|1|3|U|600
7OOD|1|3|U|601
7OOD|1|3|U|602
7OOD|1|3|G|603
7OOD|1|3|A|604
7OOD|1|3|A|605
7OOD|1|3|G|606
7OOD|1|3|U|607
7OOD|1|3|A|608
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain b
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L21
- Chain y
- 50S ribosomal protein L32
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