HL_7OOD_023

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAAAUUC

Length

9 nucleotides

Bulged bases

7OOD|1|3|A|816, 7OOD|1|3|U|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_023 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.1783

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OOD|1|3|G|813
7OOD|1|3|U|814
7OOD|1|3|G|815
7OOD|1|3|A|816
7OOD|1|3|A|817
7OOD|1|3|A|818
7OOD|1|3|U|819
7OOD|1|3|U|820
7OOD|1|3|C|821

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2