HL_7OOD_043

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_043 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.3106

The information below is about HL_3HHN_010

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7OOD|1|3|U|1746
7OOD|1|3|G|1747
7OOD|1|3|U|1748
7OOD|1|3|A|1749
7OOD|1|3|A|1750
7OOD|1|3|A|1751
7OOD|1|3|A|1752
7OOD|1|3|G|1753

Current chains

Chain 3

23S ribosomal RNA

Nearby chains