HL_7OOD_047

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_047 not in the Motif Atlas

Geometric match to HL_4QLM_001

Geometric discrepancy: 0.2236

The information below is about HL_4QLM_001

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7OOD|1|3|C|1875
7OOD|1|3|G|1876
7OOD|1|3|C|1877
7OOD|1|3|A|1878
7OOD|1|3|A|1879
7OOD|1|3|G|1880

Current chains

Chain 3

23S ribosomal RNA

Nearby chains