HL_7OOD_048

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

7OOD|1|3|A|1920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_048 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1656

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OOD|1|3|G|1917
7OOD|1|3|U|1918
7OOD|1|3|A|1919
7OOD|1|3|A|1920
7OOD|1|3|C|1921
7OOD|1|3|U|1922
7OOD|1|3|A|1923
7OOD|1|3|U|1924
7OOD|1|3|A|1925
7OOD|1|3|A|1926
7OOD|1|3|C|1927

Current chains

Chain 3

23S ribosomal RNA

Nearby chains