HL_7OOD_055

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_055 not in the Motif Atlas

Geometric match to HL_5J7L_188

Geometric discrepancy: 0.232

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7OOD|1|3|G|2311
7OOD|1|3|G|2312
7OOD|1|3|U|2313
7OOD|1|3|U|2314
7OOD|1|3|G|2315
7OOD|1|3|G|2316
7OOD|1|3|A|2317
7OOD|1|3|A|2318
7OOD|1|3|A|2319
7OOD|1|3|U|2320
7OOD|1|3|C|2321

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L5