HL_7OOD_066

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7OOD|1|3|G|2759, 7OOD|1|3|C|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_066 not in the Motif Atlas

Geometric match to HL_4V9F_068

Geometric discrepancy: 0.1837

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

7OOD|1|3|C|2753
7OOD|1|3|U|2754
7OOD|1|3|G|2755
7OOD|1|3|A|2756
7OOD|1|3|A|2757
7OOD|1|3|A|2758
7OOD|1|3|G|2759
7OOD|1|3|C|2760
7OOD|1|3|A|2761
7OOD|1|3|U|2762
7OOD|1|3|C|2763
7OOD|1|3|U|2764
7OOD|1|3|A|2765
7OOD|1|3|A|2766
7OOD|1|3|G|2767

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain e

50S ribosomal protein L6

Chain i

50S ribosomal protein L13