HL_7OOD_071

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGGAAAG

Length

8 nucleotides

Bulged bases

7OOD|1|3|A|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_071 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1752

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7OOD|1|3|U|339
7OOD|1|3|U|340
7OOD|1|3|G|341
7OOD|1|3|G|342
7OOD|1|3|A|343
7OOD|1|3|A|344
7OOD|1|3|A|345
7OOD|1|3|G|346

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L24