HL_7OPE_042

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

7OPE|1|A|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_042 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1564

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7OPE|1|A|A|1675
7OPE|1|A|G|1676
7OPE|1|A|A|1677
7OPE|1|A|G|1678
7OPE|1|A|A|1679
7OPE|1|A|A|1680
7OPE|1|A|U|1681

Current chains

Chain A

23S rRNA

Nearby chains