HL_7OSA_007

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7OSA|1|18S|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSA_007 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.0946

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7OSA|1|18S|G|330
7OSA|1|18S|A|331
7OSA|1|18S|U|332
7OSA|1|18S|A|333
7OSA|1|18S|G|334
7OSA|1|18S|U|335
7OSA|1|18S|G|336
7OSA|1|18S|G|337
7OSA|1|18S|C|338

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS8

40S ribosomal protein S8

Chain uS17

40S ribosomal protein S11-B