HL_7OSA_026

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

7OSA|1|18S|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSA_026 not in the Motif Atlas

Homologous match to HL_8C3A_217

Geometric discrepancy: 0.1116

The information below is about HL_8C3A_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7OSA|1|18S|G|1188
7OSA|1|18S|A|1189
7OSA|1|18S|C|1190
7OSA|1|18S|U|1191
7OSA|1|18S|C|1192
7OSA|1|18S|A|1193
7OSA|1|18S|A|1194
7OSA|1|18S|C|1195
7OSA|1|18S|A|1196
7OSA|1|18S|C|1197

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain PSIT

Transfer RNA; tRNA

Chain uS10

40S ribosomal protein S20

Chain uS14

HLJ1_G0030400.mRNA.1.CDS.1

Chain uS9

BJ4_G0008010.mRNA.1.CDS.1