HL_7OSA_041

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7OSA|1|25S|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSA_041 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.1354

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7OSA|1|25S|U|194
7OSA|1|25S|U|195
7OSA|1|25S|G|196
7OSA|1|25S|G|197
7OSA|1|25S|A|198
7OSA|1|25S|A|199
7OSA|1|25S|C|200
7OSA|1|25S|A|201

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL32

HN1_G0013350.mRNA.1.CDS.1

Chain uL24

60S ribosomal protein L26-A