3D structure

PDB id
7OSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGCAGCAG
Length
8 nucleotides
Bulged bases
7OSA|1|25S|C|1846, 7OSA|1|25S|G|1848, 7OSA|1|25S|A|1850
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OSA_077 not in the Motif Atlas
Homologous match to HL_8P9A_152
Geometric discrepancy: 0.0871
The information below is about HL_8P9A_152
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

7OSA|1|25S|C|1844
7OSA|1|25S|G|1845
7OSA|1|25S|C|1846
7OSA|1|25S|A|1847
7OSA|1|25S|G|1848
7OSA|1|25S|C|1849
7OSA|1|25S|A|1850
7OSA|1|25S|G|1851

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain eL37
Ribosomal protein L37
Chain eL39
60S ribosomal protein L39
Chain uL22
BJ4_G0005750.mRNA.1.CDS.1
Chain uL4
BJ4_G0008850.mRNA.1.CDS.1

Coloring options:


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