HL_7OSA_125

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGCCCGGUAG

Length

11 nucleotides

Bulged bases

7OSA|1|PSIT|G|19, 7OSA|1|PSIT|G|20, 7OSA|1|PSIT|U|21, 7OSA|1|PSIT|A|22

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSA_125 not in the Motif Atlas

Homologous match to HL_3WQY_001

Geometric discrepancy: 0.1772

The information below is about HL_3WQY_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_57684.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7OSA|1|PSIT|C|13
7OSA|1|PSIT|A|14
7OSA|1|PSIT|G|15
7OSA|1|PSIT|C|16
7OSA|1|PSIT|C|17
7OSA|1|PSIT|C|18
7OSA|1|PSIT|G|19
7OSA|1|PSIT|G|20
7OSA|1|PSIT|U|21
7OSA|1|PSIT|A|22
7OSA|1|PSIT|G|23

Current chains

Chain PSIT

Psite tRNA-Phe

Nearby chains

Chain 25S

Large subunit ribosomal RNA; LSU rRNA