3D structure

PDB id
7OSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGAGAAUC
Length
9 nucleotides
Bulged bases
7OSA|1|25S|G|218, 7OSA|1|25S|A|219, 7OSA|1|25S|G|220
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OSA_129 not in the Motif Atlas
Homologous match to HL_8P9A_119
Geometric discrepancy: 0.1089
The information below is about HL_8P9A_119
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_27670.2
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
13

Unit IDs

7OSA|1|25S|G|216
7OSA|1|25S|U|217
7OSA|1|25S|G|218
7OSA|1|25S|A|219
7OSA|1|25S|G|220
7OSA|1|25S|A|221
7OSA|1|25S|A|222
7OSA|1|25S|U|223
7OSA|1|25S|C|224

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain 58S
5.8S ribosomal RNA; 5.8S rRNA
Chain uL24
60S ribosomal protein L26-A
Chain uL4
BJ4_G0008850.mRNA.1.CDS.1

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