HL_7OSM_003

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7OSM|1|18S|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.179

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OSM|1|18S|G|154
7OSM|1|18S|U|155
7OSM|1|18S|A|156
7OSM|1|18S|A|157
7OSM|1|18S|U|158
7OSM|1|18S|U|159
7OSM|1|18S|C|160

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eEF2

Elongation factor 2

Chain eS24

40S ribosomal protein S24

Chain eS6

40S ribosomal protein S6