HL_7OSM_011

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

7OSM|1|18S|A|452, 7OSM|1|18S|U|454, 7OSM|1|18S|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_011 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1536

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7OSM|1|18S|U|450
7OSM|1|18S|A|451
7OSM|1|18S|A|452
7OSM|1|18S|U|453
7OSM|1|18S|U|454
7OSM|1|18S|C|455
7OSM|1|18S|A|456

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS24

40S ribosomal protein S24

Chain eS4

40S ribosomal protein S4