HL_7OSM_023

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUUUUUAAUGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_023 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3319

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

7OSM|1|18S|U|1054
7OSM|1|18S|U|1055
7OSM|1|18S|U|1056
7OSM|1|18S|U|1057
7OSM|1|18S|U|1058
7OSM|1|18S|U|1059
7OSM|1|18S|U|1060
7OSM|1|18S|A|1061
7OSM|1|18S|A|1062
7OSM|1|18S|U|1063
7OSM|1|18S|G|1064
7OSM|1|18S|A|1065

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS1

40S ribosomal protein S1

Chain eS27

40S ribosomal protein S27-A