3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AGAAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OSM_024 not in the Motif Atlas
Homologous match to HL_4V88_210
Geometric discrepancy: 0.1138
The information below is about HL_4V88_210
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7OSM|1|18S|A|1084
7OSM|1|18S|G|1085
7OSM|1|18S|A|1086
7OSM|1|18S|A|1087
7OSM|1|18S|A|1088
7OSM|1|18S|U|1089

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS26
40S ribosomal protein S26
Chain uS5
40S ribosomal protein S2

Coloring options:


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