HL_7OSM_026
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGACUCAACACG
- Length
- 12 nucleotides
- Bulged bases
- 7OSM|1|18S|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OSM_026 not in the Motif Atlas
- Geometric match to HL_6UFM_001
- Geometric discrepancy: 0.3122
- The information below is about HL_6UFM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_04642.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7OSM|1|18S|U|1187
7OSM|1|18S|G|1188
7OSM|1|18S|A|1189
7OSM|1|18S|C|1190
7OSM|1|18S|U|1191
7OSM|1|18S|C|1192
7OSM|1|18S|A|1193
7OSM|1|18S|A|1194
7OSM|1|18S|C|1195
7OSM|1|18S|A|1196
7OSM|1|18S|C|1197
7OSM|1|18S|G|1198
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain ASIT
- Transfer RNA; tRNA
- Chain PSIT
- Transfer RNA; tRNA
- Chain uS10
- 40S ribosomal protein S20
- Chain uS14
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain uS9
- BJ4_G0008010.mRNA.1.CDS.1
Coloring options: