HL_7OSM_031

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_031 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.3447

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7OSM|1|18S|U|1396
7OSM|1|18S|U|1397
7OSM|1|18S|U|1398
7OSM|1|18S|C|1399
7OSM|1|18S|A|1400
7OSM|1|18S|A|1401
7OSM|1|18S|G|1402

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS17

BJ4_G0020710.mRNA.1.CDS.1

Chain eS28

eS28