HL_7OSM_033
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 7OSM|1|18S|U|1557, 7OSM|1|18S|U|1558, 7OSM|1|18S|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OSM_033 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2183
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7OSM|1|18S|A|1550
7OSM|1|18S|U|1551
7OSM|1|18S|U|1552
7OSM|1|18S|G|1553
7OSM|1|18S|U|1554
7OSM|1|18S|A|1555
7OSM|1|18S|A|1556
7OSM|1|18S|U|1557
7OSM|1|18S|U|1558
7OSM|1|18S|A|1559
7OSM|1|18S|U|1560
7OSM|1|18S|U|1561
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain eS19
- 40S ribosomal protein S19-A
- Chain uS13
- 40S ribosomal protein S18-B
- Chain uS14
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain uS19
- 40S ribosomal protein S15
Coloring options: