HL_7OSM_036

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_036 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.302

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OSM|1|18S|G|1778
7OSM|1|18S|U|1779
7OSM|1|18S|G|1780
7OSM|1|18S|A|1781
7OSM|1|18S|A|1782
7OSM|1|18S|C|1783

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain 25S

Large subunit ribosomal RNA; LSU rRNA

Chain eL41

eL41