HL_7OSM_043
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 7OSM|1|25S|G|218, 7OSM|1|25S|A|219, 7OSM|1|25S|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OSM_043 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1574
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
7OSM|1|25S|G|216
7OSM|1|25S|U|217
7OSM|1|25S|G|218
7OSM|1|25S|A|219
7OSM|1|25S|G|220
7OSM|1|25S|A|221
7OSM|1|25S|A|222
7OSM|1|25S|U|223
7OSM|1|25S|C|224
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain 58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain uL24
- 60S ribosomal protein L26-A
- Chain uL4
- BJ4_G0008850.mRNA.1.CDS.1
Coloring options: