HL_7OSM_045

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAAUUCC

Length

10 nucleotides

Bulged bases

7OSM|1|25S|G|304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_045 not in the Motif Atlas

Geometric match to HL_4QLM_002

Geometric discrepancy: 0.3621

The information below is about HL_4QLM_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_77600.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7OSM|1|25S|G|303
7OSM|1|25S|G|304
7OSM|1|25S|U|305
7OSM|1|25S|A|306
7OSM|1|25S|A|307
7OSM|1|25S|A|308
7OSM|1|25S|U|309
7OSM|1|25S|U|310
7OSM|1|25S|C|311
7OSM|1|25S|C|312

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL13

60S ribosomal protein L13

Chain eL15

60S ribosomal protein L15-A

Chain eL36

60S ribosomal protein L36-A

Chain eL42

BJ4_G0001880.mRNA.1.CDS.1

Chain uL15

60S ribosomal protein L28