HL_7OSM_057

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7OSM|1|25S|A|913, 7OSM|1|25S|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_057 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0835

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OSM|1|25S|G|910
7OSM|1|25S|C|911
7OSM|1|25S|G|912
7OSM|1|25S|A|913
7OSM|1|25S|A|914
7OSM|1|25S|A|915
7OSM|1|25S|G|916
7OSM|1|25S|A|917
7OSM|1|25S|C|918

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL15

60S ribosomal protein L15-A

Chain eL37

Ribosomal protein L37

Chain uL2

60S ribosomal protein L2-B